Instrumentation & Software

An academic research-base and commercially systemised infrastructure provide a strong foundation for our state-of-the art technology and industry standard resources

https://proteomics.lifesci.dundee.ac.uk/sites/proteomics.lifesci.dundee.ac.uk/files/Laminar%20flow_8451.jpg

 

Clean room, with laminar flow hoods, for sample handling and gel running to eliminate keratin contamination

                                                                                                                                                           

 

https://proteomics.lifesci.dundee.ac.uk/sites/proteomics.lifesci.dundee.ac.uk/files/QExactive_8382.jpg

 

 

1  Thermo Q-Exactive HF mass spectromter with Thermo U3000 RSLC direct nanoflow LC system with Thermo EasySpray Source

 

https://proteomics.lifesci.dundee.ac.uk/sites/proteomics.lifesci.dundee.ac.uk/files/Velos_8351.jpg

 

 

4 Thermo Orbitrap mass spectrometers (3 LTQ Orbitrap Velos Pro and a LTQ Orbitrap XL) with Dionex U3000 RSLC direct nanoflow LC systems with Thermo EasySpray Sources for the ultimate in sensitivity

                                                                     

 

 

https://proteomics.lifesci.dundee.ac.uk/sites/proteomics.lifesci.dundee.ac.uk/files/QC2_8403.jpg

 

1 LTQ Velos ms system for Quality Control of samples submitted for LTQ Orbitrap Velos Pro analysis

   

  

https://proteomics.lifesci.dundee.ac.uk/sites/proteomics.lifesci.dundee.ac.uk/files/Quantiva%202_8422.jpg

 

 

 

1 Thermo TSQ Quantiva Triple Quadrupole mass Spectrometer                                                                

 

 

 

https://proteomics.lifesci.dundee.ac.uk/sites/proteomics.lifesci.dundee.ac.uk/files/QTOF_8329_0.jpg

 

Agilent 6520 QTOF mass spectrometer with Agilent 1200 nanoLC system with micofluidic ESI interface (ChipCube)

  

 

https://proteomics.lifesci.dundee.ac.uk/sites/proteomics.lifesci.dundee.ac.uk/files/MALDI%20%282%29_8472.jpg

 

 

1 Bruker Autoflex Speed MALDI-TOF MS system

                    

https://proteomics.lifesci.dundee.ac.uk/sites/proteomics.lifesci.dundee.ac.uk/files/Imager_8447.jpg

 

 

ProXpress-II High Resolution  Imager

 

 

32-node MASCOT cluster for external and in-house database searches.

Enterprise-standard data back-up to disks and tape.

 

Software for Proteomic Data Analysis

  • ProLIMS with PepTracker® Integration (University of Dundee)
  • Mascot Server, Mascot Daemon and Mascot Distiller (Matrix Science)
  • Proteome Discoverer (Thermo Scientific)
  • Progenesis QI (Waters)
  • MaxQuant (Mann Group)
  • PEAKS (Bioinformatics Solutions Inc)
  • Scaffold (Proteome Software)